Scaffold PicViral_1004440

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1004440
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3546
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081767	Metagenome / Metatranscriptome	114	N
F099864	Metagenome	103	N
F103905	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10044406	F099864	AGG	MSAGKISWMIDENDFMTIIKVDGLAFPTPVNGEDAAKSRIKHMQKYKIGTKISLVQFCSNGDYNSIMWSIVPETKWTRSSADRRLVINV*
PicViral_10044408	F081767	GGA	VNLIKISSTSERQDELNIQKFKSVAVRIETYKVLKKLASKDNRSTGMQITHLVEKEDKRQRRRAT*
PicViral_10044409	F103905	N/A	FKEGFRLGQRLVRAKILYAQATDARQLGDTQMSEFYAGAAKQWSDLAHNAGRKFCPEVALEPEQPVFDFGDPERLVDSEPDQDQFDVRKAG*