Scaffold PicViral_1004419

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1004419
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5868
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006447	Metagenome / Metatranscriptome	373	Y
F022755	Metagenome	213	N
F055201	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10044194	F022755	N/A	VVAVNGAITKARKGFRIPDQTAHITFSGTDYDGAEIWVRLNVSFAHYIALRKAAESDNQAEMAELFGGEILMEWNLEDASGKPISATGGGMLQIPLSLAMLIVQHWIEAVSAVPTPLPEPSGDISTLAAASTATGEV*
PicViral_10044196	F055201	GGA	MTTHWRATRPKNSHWREASCLEVGCAQYIGGWQTVLPCTDIANIEYIRRSGMRCKEELDDQLIRFIFEPGQECFKGRGGGHRTPLERDPILSRNRQTMEPMEWLDRMNDDLDQIRARN*
PicViral_10044199	F006447	N/A	VSAGAVSVGLYFVVKDVASATYNWPEPAEYQVTAKGLQTMGQKNEDYPDGTESQTLSIRLGDGARISTLRITNTDLGRAGISKALDISPLTNAVTGAAAYLWVGNLTITNSSFPTFKMETSDVANLVTGLLCDGHTMAATISNTVSDMVLESERISSVYEVSGSVVDRIQIHITGNSGAFVENLILDNVDAWSGEMYLSRMKIGTMTINNSNKVGDGTGVDSASCVIDSSVLSRNITNTIQDRPIKVQ*