Scaffold PicViral_1004147

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1004147
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6934
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F002506	Metagenome	553	Y
F043626	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100414715	F000782	AGGAG	MTKQDFKTSVNGFFSVRWFKNNGEEAYIHRGILGTTKKIEGQHREHNNYVLVYKVGNGYQPEHSKWANVNPNTVIAINGGRV*
PicViral_100414716	F002506	AGGAG	MAKEVATSKQTSMTNVDISPVITEVIEYAKDQATTTDIQSIIASVPKSASMDWKLVSGVIMNSLVEWVVENKDKDEVKSLELINHLQKDVGYLLKRIGLAQ*
PicViral_10041479	F043626	GGA	MKTAHRKQSKTPKFNPRKARLAIVHWLDAQDGEGGWTPIRQVLKHELATVYDVGWIVHEDKEKIIIMGSMCWEGPAKKDLDGGRFCSIPKSWVNKIWYLDKGKDYENVRVQFVGQNGTKGKNRKRI*