Scaffold PicViral_1003827

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1003827
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3874
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F065107	Metagenome / Metatranscriptome	128	Y
F097504	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10038272	F001066	N/A	MSDDLFKIQPIGKGGKVVLDKRKTVSPFNSAKHLKSANIPAYCDQCVYRSIEDGGNGKCPKYEMGAVCAIREDFIKFINELDTRNPEDVKAMLDMLAKLSFENVLMALAESKFDGNIPDRNTKSEINTLLNVVKAINDLNSKIVISERTKYDNKGDIESIFKQIKAQRSD*
PicViral_10038273	F097504	GAGG	MEDGLFIWFLCGCYLVGGITIGWFGGIWYRNRKGKRTGTGRWDWSNKRNTDGDHFT*
PicViral_10038274	F065107	N/A	MGHPNKQVLEERKNFVQTITDCARKPSKFSEIFLDHKLFPYNAKYVDCQDRFIV*