NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold PicViral_1003827

Scaffold PicViral_1003827


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1003827 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3874
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F065107Metagenome / Metatranscriptome128Y
F097504Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
PicViral_10038272F001066N/AMSDDLFKIQPIGKGGKVVLDKRKTVSPFNSAKHLKSANIPAYCDQCVYRSIEDGGNGKCPKYEMGAVCAIREDFIKFINELDTRNPEDVKAMLDMLAKLSFENVLMALAESKFDGNIPDRNTKSEINTLLNVVKAINDLNSKIVISERTKYDNKGDIESIFKQIKAQRSD*
PicViral_10038273F097504GAGGMEDGLFIWFLCGCYLVGGITIGWFGGIWYRNRKGKRTGTGRWDWSNKRNTDGDHFT*
PicViral_10038274F065107N/AMGHPNKQVLEERKNFVQTITDCARKPSKFSEIFLDHKLFPYNAKYVDCQDRFIV*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.