Scaffold PicViral_1003777

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1003777
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4869
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029400	Metagenome	188	Y
F058991	Metagenome	134	Y
F081216	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100377715	F058991	GGAG	MQTHADFRIGMLVRWHGSGGTDCDDDPDDLGIVVKMPGENWHGNYHIAWSVSNCESHHSPEMIEESLYQGIMEIVR*
PicViral_10037775	F081216	GAG	MNFQVGDLITLKHHRGNPDSPPPLAIVVSLDAFIFGRILIQHRGTSGPEMAAPEHWIVVSRYENR*
PicViral_10037778	F029400	GGAGG	MKIGDLVTFCPEAWGTPLEDRPLGVITNVVLDDPRWTSMVTVMFPADIDRDPSIPYSSKIEDFEVINEDW*