Scaffold PicViral_1003320

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1003320
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9786
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021532	Metagenome	218	Y
F034892	Metagenome	173	Y
F100958	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100332011	F100958	AGGAG	MVFHGDCEVEFEIYEKREGDWRSKFLGHMVGSNPQDAKTRWMEQHETSPEKCDKIQALLPYEEWK*
PicViral_100332012	F034892	N/A	MEVKVGDLVRIKGNDWLGKPLGVVTEIKHLTHEQSGVQYTAITALVSGQYFTFPDKSFELVSKVERNSN*
PicViral_10033204	F021532	GGAG	MMKEVIVLKEKWNVGAQDVPSARALEMVEVKESQFAEAPFPLSLDTQKRLLELIYNRKSGIITRQELIDVLFNSTTAPKGHIIRCLI*