Scaffold PicViral_1003291

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1003291
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6486
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F016285	Metagenome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100329110	F013896	GGTGG	MICDKCNGNGFTIVKGKTVQCKKCLSSGELPGTPTPPKYLDDDLANVYQTLYEESLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDNMMEKILKTDVQPYKKETLQ*
PicViral_100329113	F016285	N/A	LRSDYNMIKKLKMGILLWIQDWSGQLNGWAWRKWDKLNHRDWLKGYKKWKDEK*
PicViral_10032918	F009536	N/A	MQKEVMKQALELMPGELKEEIKINLENSKSYTRLFVKIVEEINNMKVSLPKFTGLKNSILKINKQAHSKITDEIKNSTPKAQSTLNVKDIEYWLQTAKKGESLIYYTGRTLDYPKSSQEEAVFRKARNLAMDYDSIPIKNKKYQYRGSVRGEWGCNYKDIITLIQKKVARLQKDKEGNIISYPIYNYMMIKI*
PicViral_10032919	F000567	N/A	MKEKLLKITQKITMWHEGMFKYLTLKSKTSVFFTWLLVLICLYEIFEHIFIPLALIWWGFQ*