Scaffold PicViral_1003154

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1003154
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4366
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002748	Metagenome	533	Y
F056668	Metagenome	137	N
F076172	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10031543	F076172	N/A	MTEKTERKRKELLQFIKTVGAPHIYTMYNFYLKETGCDELIPDGPDEPILDA*
PicViral_10031544	F056668	N/A	MTIEGKTAKQYNKKRVSSWAIQVQWDNGDVENITELPNGVAHEIDEFLTELEK*
PicViral_10031548	F002748	AGGA	MNLIMQLVLFTLGLLLFGFGLFVGVYPEGDQTVGVLLMFGGLAQIIYSIGVGDER*