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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003690 Open in IMG/M |
| Scaffold ID | PicViral_1003051 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8007 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (69.23%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mid-Cayman Rise, Caribbean Sea | |||||||
| Coordinates | Lat. (o) | 53.0 | Long. (o) | Alt. (m) | Depth (m) | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013700 | Metagenome | 269 | Y |
| F032813 | Metagenome | 179 | N |
| F040683 | Metagenome | 161 | Y |
| F061266 | Metagenome / Metatranscriptome | 132 | Y |
| F096041 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| PicViral_100305111 | F032813 | AGGAGG | MKTNEEGHVWLEKSQAYICPSYLNKTYTDFSDTDSESLYNLYQKHFPNARVDGIKSQVKDEIFNLIAKDNYKKKNLIKALRNKFPEISSGIICRIIKNYLSLRVLEIDKKYKTKPFIVKGKYYVK* |
| PicViral_100305115 | F061266 | N/A | MFETKKEEEVKVKKFMVMYKWKRSTVFYHENSFFNREDADSFAELMRKQEPKENGNQYYLFEQSKHYGNSDGKK* |
| PicViral_100305119 | F040683 | AGGAGG | MKKYRVWGYKTQGYYIDLEANNKRDARDKAMDVNTEDFIEGNDGEHTSFDINQKDIERIDNES* |
| PicViral_100305122 | F013700 | AGGAG | MDYKNLTYPFTENDDAPFNVVRILNENDDAPFNVVRILNECYNDYSDGNLGDGEHLANGQQVRGEFLRRIAQLGYDELKYDGIASTLEEDVDENNSRLHSKYCEPSETNEEDN* |
| PicViral_100305124 | F096041 | AGGAG | MKLNKNKEYIYVTRTMKINVPALHCDEAVDKVKMMKKNDLIPKELGTLYTRCRVRDRGNRYEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |