Scaffold PicViral_1002711

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1002711
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4799
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047715	Metagenome	149	N
F064782	Metagenome / Metatranscriptome	128	N
F067816	Metagenome / Metatranscriptome	125	N
F088726	Metagenome	109	Y
F095325	Metagenome	105	N
F099127	Metagenome	103	N
F103082	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100271110	F064782	GAG	MDLKAEVVLKNLRKEIKKIRDRNRKMKNHPYAENTMVMIGLMRAVEIVDGLRNEEMEKLIDWRAEQKRIVSN*
PicViral_100271111	F047715	N/A	MLYGKNGIVELDMYTDYCPTCTTDKDETVYLKSYGEAYKDIMSSTVKMEWFMKCPRCEQLFDGGDLYIEREHGLKSRSGIKES*
PicViral_100271112	F067816	AGGA	MTTDVYLDDKTGSIPAVEVDIILVLADYEGANLEAPSARREIARAVHRMLLAKNYVVRQKRDSGT*
PicViral_10027112	F103082	GAG	MKNPTVARKKKRPTVKQLAGDVESLWSGMMYLDKNLTAIQRYFEEYLIMKDEVEPFMEYFEGRIADAKKSKEHKAG*
PicViral_10027113	F088726	GAG	MNRQDIIGHALIKFSESEIDLILTALYNTEKLDIPRVKSKWKRPYTNLIKELLHIKETIEREKEKQS*
PicViral_10027115	F099127	AGGA	LTDSPAYYDLSGDSDGGKLPAGNYEAIIVDMDTVTDIKCGVFIADVFKPVYRVTAGDHKNMEVTDNGIFRYKQVDGYEYESNKNWGFAKFMQMLGMYSKKDGKVNLPYITNNDISNKQVRIMVWDKTFTNETNDRISYPVARAMSLINDVPF*
PicViral_10027118	F095325	AGGA	MNEEQQPDWDNINRGKVRHFFALELYRKGGKLTDTEIGTIEMYVEYIMNGADFRDVIKEQSALALMSRKECEDIITGRLRDIDSVTAEEHTKAIIHLEANGLKDNDLKPVLEALDSGKIHQGNLKASIDKIDNIKSEYDKE*