Scaffold PicViral_1002607

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1002607
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4914
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004179	Metagenome	449	Y
F017717	Metagenome	239	Y
F026025	Metagenome / Metatranscriptome	199	Y
F089401	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10026073	F004179	AGGA	MNKEIQIEMRNVFGVDRIYPICHIANALIKLKSGKTFSKDDLNVFKSLGLIIKWKAGSV*
PicViral_10026075	F089401	GGA	MSEKNICQNPKCCDYTSKDRWNKKINKYQSRKAYFNINKIRQTYCTILCYFCTAGCANNWLDDNIENIIERKEIPNKILDKIIRA*
PicViral_10026076	F026025	N/A	MLFKRGDRFTLVVKNDTHKGQPNKHTMLRYGVFDKDSKFLVSKNKIVFFDTTVHEYRHMKLTNIFAITNITRLDEEQEQQTPSDTCRSKTCENNLIGYQSQIDKRYCSDCV*
PicViral_10026077	F017717	N/A	MFKLDKKVYEGNPTSELIAKVVHELGHMFDVLSVKILENRKRIMTLERKIKELEGSKNVI