Scaffold PicViral_1002559

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1002559
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6484
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F012399	Metagenome	281	Y
F035959	Metagenome / Metatranscriptome	171	Y
F092707	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100255911	F035959	GGAGG	MPKAKSLVNVTFGATGEVYELGQTYDVPAEILKKYPDYFKVRKAGANKQIETEENK*
PicViral_10025594	F092707	N/A	VDGSSNDAGGSLSLGIARWQAVRGGTYQDGRPVTKPIDLDMAEIVDGICQRYSCLPSELMGEEVGILRMLAIVDEGRVEDKKSG*
PicViral_10025595	F012399	N/A	MAVSTNGVKPYIIQRRRVILVFEEPEYSGIHIEARLDVDLRTFLDLQRLAGASDSNPDDLRAAFQMFGDEILSSWNLEDEDGTVLSADASGFLSLPPSLATKILGAWTEAATTPGEVSASA*
PicViral_10025598	F008778	GAGG	LSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGSPVLAFWVTGRRNDFETLGDIGSRVTVTVRAYFRMQDSPDVRESIEEEVWDAMYQIDSQLRSDADLGGNVTDSSVGAATVGYTNMSGGVFRTVSVPYEMELYGEVTITP*