NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold PicViral_1002231

Scaffold PicViral_1002231


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1002231 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5383
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000782Metagenome894Y
F004908Metagenome / Metatranscriptome419Y
F011291Metagenome / Metatranscriptome292Y
F012880Metagenome276Y
F016013Metagenome250Y

Sequences

Protein IDFamilyRBSSequence
PicViral_100223111F011291AGGAMEKFEINVWKDAELLSKEVVEFETSELCHEYLVKKYHAPGSWTAEHQNINGVTLHRPPVGIRVTWGKLPGPIYKPRKLSAEEKKLQRELYNSITLEEIPELGRNEMLVKVRKDYYGHPDAKGMEDKR*
PicViral_100223113F004908N/AMERQEHKELIPTLKIIDLFQVDEGAINPKTGLTEKPSWYVRFEDMTDRVLFKSKMLELLSMGFRKTVENFKAGKAKTNQGGQARFWVVVFQDYEVRLQTKEQIMEVVMEGHKHREDGEYAKFERTSDRSEEEPITLD*
PicViral_10022312F000782AGGMTKQQFKLSVKGIFSVRWLKNDGTERYLHRCILGLTKKVEGQPFEHTDYVLIYKIGNGYGTQRRWGNINPNTITHINGVAI*
PicViral_10022313F012880GGAGMKFNAITLIWSIAIMLLIFQICLLWIDWEFTNTIAYKFVLLLDGFMFGMVMMDWSHNA*
PicViral_10022314F016013GGAGMPKDIIPIKSVNAVDISPLLREVIEYTKDQNAVGNLEALISKVPNKDSLDWKLISGVLCNAIIEWIAKDTSNRKDLIIHLQKEIGYLLQRMGLTM*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.