NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1002092

Scaffold PicViral_1002092


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1002092 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20073
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008778Metagenome / Metatranscriptome328Y
F012399Metagenome281Y
F018619Metagenome234Y
F053776Metagenome140N
F068118Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
PicViral_100209211F018619GGAMAVASDLNTHIRDNLLVLSTHAHSGAAGMGSSTLSGVSLTLTIPVLASQGSSPATQGMLLRKSNNLEYYNGSAVVGLYADAVAGTASHRTLGTGSTQAAAGNHTHV*
PicViral_100209218F012399N/AVVATKNGVRPYTIQRRRAILVFAQPEYEGIRIEARLDVDLRTFLDLQQLAGGVDNDLDKLRAAFSMFGDEILDAWNLQDEDGTVLTPDAKGFLSLPPSLGTAILGAWSEAATTAGEASASE*
PicViral_100209221F008778GAGGMSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGTPVLAFWVTGRRNDFETLGDIGSRTTVMVRAYFRMQDSPDVRESIELAVWDAMVQIDTQLRSDAELGGNVTDSSLGPATVGYTNMSGGVYRTVSVPFEMEIYGEVTITA*
PicViral_100209224F068118GGAGGMPKAKCTQNVTFGATGEVYEDGKTYDVPAATLKRYPDYFKIRNTAANKQAETEENK*
PicViral_10020923F053776AGGAGGMGNMVTKIRPQILCAMFLIAGLGALGCFVGLKMSAAEIVTGALGATVSLIGVLGMKVLETDE*
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