Scaffold PicViral_1002044

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1002044
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16241
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (60.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005149	Metagenome / Metatranscriptome	410	Y
F033601	Metagenome / Metatranscriptome	177	Y
F035965	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100204417	F033601	AGG	MSNEEYIGVIININNIQWRVADKRKIYGREWQYTLSHENVDGTYDSMSLNEDALKQIIKSGSQVIDSEYK*
PicViral_100204423	F005149	AGGA	MIKKIKTKCLLCKAVTYPGHYFYDHLEDVHMMPIKRERIIAVGIDKYGQEKGLAEEETNDECMERFKFTHPEYGTEICWCPNCIGGETLDKVSKVCKIHGQIYVKGKHGA*
PicViral_10020446	F035965	GGA	VDSRLDYLIKKFDGVLIDDYGWEHYKVDGKEYDIRFDRSRMEWACDCLAFTYRHKFKKMYCKHILEIQDRKLAQRSGRASFESCLAL*