Scaffold PicViral_1002012

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1002012
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10307
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003481	Metagenome	484	Y
F006447	Metagenome / Metatranscriptome	373	Y
F028313	Metagenome	192	Y
F105886	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10020121	F105886	N/A	ADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGNATVSTLDMGGALYRTATIPFEIQIYGDVTITP*
PicViral_100201212	F028313	GGA	VKPWELERAEIIDGLCQRYSCLPSQLMEEEAAILSMLAIVQAGQPDESNG*
PicViral_10020123	F003481	N/A	MDDIQEELRLAREELERLRQTREDKSEKIQMNSGDIVRLVIAAPVVFVWLFLGSRIIISATTSTAVLEHIEPLLLALSILTIPVTAILSSLFRVDGK*
PicViral_10020124	F006447	GAG	MTLFEKICRMVGDRRIPAFKMPAFKRFRVGFANRHATSVVVLAIMVSAGAVSVGLFFAIRDVNSTTYNWPEPAEYAVTAEGLQTMGQKNQDYPDGTESQTLSIRLADGARISNLSISGTNLGRAGIARALDISPLTTAVTGTGAYLFVGNLTMTGSAFPTLKVEQSEVGTLTTGLLCDGHTMAATITNTIPDQVLTSKRLSSVYSVSDSIVDRIQIHITGTSGAYIDQLTISDVQAWNGEAYFSRLKVGTLTFNNTSQIGDGSGVDSASCYFDSSVLARNITNTIQDRPIKVQ*