Scaffold PicViral_1001616

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1001616
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6560
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F084099	Metagenome	112	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100161611	F084099	GAGG	MKIGDIVTMNHALTPERYGLGLIQKIVPASPLLLQFPAGNSPRLVYHILWPDGVISNQYDIEIVLVSRVK*
PicViral_10016166	F012401	GGAGG	MIEGLLTLEKAALERLTENRIASGSLGEELEEFLSSAGVYWDELGNEYFSIDVFQKETFERLTQEYINEDYA*
PicViral_10016167	F090254	AGGTGG	MGIEETNYSAIDILNIVDGAELVTIVREIYLCVWHGGSVVDIYNLTEGGYPDYQVLPMFAPRCLLTVHDAIDDYFDDLDFDNENEGLTTAPVDGIVYTESDDPTEVN*
PicViral_10016168	F106167	GGAGG	VEIGDIVRLEVNPSVDWMHNYFEETFEVVGFPTETGVRVKMIGTDPEWHWIVGKDEFKIIEVED*