Scaffold PicViral_1001521

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1001521
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17392
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012399	Metagenome	281	Y
F018619	Metagenome	234	Y
F034540	Metagenome	174	Y
F047907	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100152112	F018619	N/A	MAWATPISWTSSQVTSTILNAQIKANEDVLSTHAHTNAAGQGASSMSGLTLSAVILPNLAVPVLADQAGNPGTAGRLQRNGYNLVYYDGTTLIGLYADAPVGTPSLRTLGTGATQAAAGDHTH*
PicViral_100152124	F047907	GGTGG	MTASACQVPGAYLVRDEAEPVPYGKTAVDASIIVHHYSFGWLCTACQPSLGTTRPECEHVEAAKIAARS*
PicViral_10015213	F012399	GGTGG	MVAQSTNGVKPYIIQRRRARLIFAQPEYEGIRIEARLDIDLRTFLDLQQLAGASDNNPESLRAAFTMFGDQILDSWNLQDEDGTVLTADAAGFLSLPPVLGTAILGAWSETVTMAGEASASE*
PicViral_10015218	F034540	AGAAGG	MATGDTVISIAVEGGATKSVTLTSDTRVLSRANVEGNNEAIDTDAEWQAFEVNKLANVILAQANSQAQAAASWTPQTFTAAV*