Scaffold PicViral_1001403

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1001403
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29383
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F003161	Metagenome	504	N
F039340	Metagenome	164	Y
F054352	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100140328	F003161	GAGG	VSRSGALDRIDVLLSTITDPAFTAVIRAEPLALAGTPVLAYWVQSRTSGWQTLGDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGGATVATMDMGGSLYRTATIPFSIQLMGEVTITP*
PicViral_100140337	F001651	GGA	MGLQNGTRITAELRRSQVLQLKQAGASEQAIADQLGVSKTQINNDVKRRLAEIRRSDTEAVEQEYTLQKSRYERLLLRWWSQATGSDDTQAAKATGIVLDILRRLDTIGGLVPDKPLIQFNQQNIMAGGATFADLLREAMTGGEIVEGERVDMGTNLAVEN*
PicViral_10014036	F054352	AGGAGG	MDKTRAQFVLESRRHKDIRDIILDALEQRRATQTMVRDCCVDLGVSWGTFYKWCADLDIPVGDYHFASARRG*
PicViral_10014037	F039340	GGAGG	MRPAYIFDNHKRLVERLRLILDEASVEYDSDRDVVDDFTQYVKDWETYRAEEEGRRQYG*