Scaffold PicViral_1001092

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1001092
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8228
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F051056	Metagenome / Metatranscriptome	144	Y
F068118	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10010923	F008778	GAGG	LSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGTPVLAFWLTGRRSDFETLGDIGSRVTVTIRAYFRMQDSPDVRESIEEEVWDAMYQIDSQLRSDADLGGNVTDSSVGAATVGYTNMSGGVFRTVTVPYEMELYGEVTITP*
PicViral_10010924	F051056	N/A	MPTPTTTFKMKGPVFEKPTQISLGFAEAVNRGLLDLATIEGANKVKEQLYPGHGRITANLRSHIGASIVRDYISQVDAGEARYGANLIYSNWVEGISSRNKTSVFKGYGMFAEAYDHINNNPKLYDEYIGDALIEAFD*
PicViral_10010926	F068118	AGGA	MPRAKCVQNVTFGATGEVYEAGENYDVPAATLKRYGIYFKIRKAATNKQAETQENK*