NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1001092

Scaffold PicViral_1001092


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1001092 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8228
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008778Metagenome / Metatranscriptome328Y
F051056Metagenome / Metatranscriptome144Y
F068118Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
PicViral_10010923F008778GAGGLSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGTPVLAFWLTGRRSDFETLGDIGSRVTVTIRAYFRMQDSPDVRESIEEEVWDAMYQIDSQLRSDADLGGNVTDSSVGAATVGYTNMSGGVFRTVTVPYEMELYGEVTITP*
PicViral_10010924F051056N/AMPTPTTTFKMKGPVFEKPTQISLGFAEAVNRGLLDLATIEGANKVKEQLYPGHGRITANLRSHIGASIVRDYISQVDAGEARYGANLIYSNWVEGISSRNKTSVFKGYGMFAEAYDHINNNPKLYDEYIGDALIEAFD*
PicViral_10010926F068118AGGAMPRAKCVQNVTFGATGEVYEAGENYDVPAATLKRYGIYFKIRKAATNKQAETQENK*

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