Scaffold PicViral_1000937

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000937
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22406
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (78.69%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F019113	Metagenome	231	Y
F024648	Metagenome	205	Y
F029601	Metagenome	188	Y
F034892	Metagenome	173	Y
F058991	Metagenome	134	Y
F081216	Metagenome	114	Y
F084099	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100093712	F084099	GGAGG	VKVGDIVRMNTALTPERYGLGLIQKIVEAKTILSGCEPRLVYHVLWPDGAISNQYDIEIVLVSKA*
PicViral_100093717	F081216	GGAG	VNFQVGDLITLKHHRGNPEAPPPLAIVVRLEAFVFGRIMIQHRGTSGPEMAAPEHWIVVSRNENR*
PicViral_100093725	F005524	GAG	MDIGDKVQHFSTGSIGTIIDIVYEVENPLQQMCVQWEDDKSSYKDSWEHRTALSIVPQAVYDFLITD*
PicViral_100093726	F024648	AGCAG	MCEYHLYPGDMFRTKAGLGLIVEKRSGYFYYSNVGDDQKKGYPKIETKRFYGYCDDMSHGQVLEVILVPNRKYRRKRK*
PicViral_100093732	F029601	N/A	MMKVGDLVRFVAPDDKFHESKGIIVRCVKSNMYQQGRHYELQTLDGYVIVALDFELERLENDVE*
PicViral_100093749	F019113	N/A	MEKFKVGDLVRDMLNKDSGAYGLGVVVSTESLGLMGELWGRSDGPADQDILAKRYDVYFTKFERIITFHGDYLEKV*
PicViral_100093751	F034892	N/A	MEIKVGDLIRIRGDDWIGKPLGIVTETKCLIHEQSGEQHVAVTVMVAGKYFTFGEQAFELVSAAQRKKN*
PicViral_10009378	F058991	GGAGG	VQTHADFRIGMLVRWHGSGGSDCDDDPDDLGIVVKMPGENWHGNYHIAWSGTNTVSHHSPDMIEESLYQGQMEIVEVE*