Scaffold PicViral_1000649

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000649
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37585
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (80.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018940	Metagenome / Metatranscriptome	232	Y
F031450	Metagenome / Metatranscriptome	182	Y
F076188	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100064945	F076188	GAGG	MSDIRKVLILDHRDIKTLAKHKYAELAYTTDAMLDLWNEIVDQILED*
PicViral_100064952	F018940	GAGG	MTDYENQDADFHYENSGANASEMQHAENCDWIYSNCTCGLIEALDYDVADDGDY*
PicViral_100064965	F031450	GAGG	MAENQNKKYNIDKTLTMRKSGQGEKVYSHSGGKTHALSKKPLSKEKALHQIRDITESEIESRESHGHHVGKKQQSKNKEAHNPWH*