Scaffold PicViral_1000627

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000627
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23611
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002129	Metagenome / Metatranscriptome	591	Y
F017121	Metagenome	242	Y
F065675	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100062735	F002129	GGAG	MNFTPVNNYLYVRVIEETDTEDSGILLPQDYRSAENPFTIVEVLNCSGDSGTLWGCGLQLVVEAHMLRDIQHNGDTLTVIKENHVIGILSNS*
PicViral_10006276	F065675	N/A	MKKLLPLSKELLREAKDPTYYQETFNFTILISMNKERGGSRDQTKNDIRAFPEILTVTLVEPERGGVQRDLGTKYLSTLKLHIRKPKDINKIPLMKKIVLLINNLRGVSVLRYKEQVKSSGIRQG*
PicViral_10006277	F017121	AGGAG	MFSLIQKILSRARSFDQLYDRIEKIETQIKRFEKLADENESLWQFLDEQKEIDSLFAGSMEDILSAEEFQEDITDMMLRNMKPHGDA*