Scaffold PicViral_1000620

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000620
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13434
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003481	Metagenome	484	Y
F006447	Metagenome / Metatranscriptome	373	Y
F006641	Metagenome / Metatranscriptome	368	Y
F007893	Metagenome / Metatranscriptome	343	Y
F009425	Metagenome / Metatranscriptome	318	Y
F105886	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100062012	F009425	N/A	MLIHFEVKRPRDHWREVSCREIGCVNYTMGWKTILPADDIANIELIRRSGMGFREEREDGLVVFIFTPEQECFTGQGGGHKVAVGRDPILSKDKRVMEPLQFMDHWNDHQYRRTING*
PicViral_100062015	F006447	GGA	MTLFDKICRMVGDRRIPSPKMPAFKLFRVGFANRHVSTIVVMAIMVSAGAVSVGLYFAIKDVNSTTYNWPEPAEYAVTVEGLQTMGKKNPPMADGTESQTLSIRLGDGIRISTLRIKDSDVGRAGIARSLDISPYTTAVTGASAYLWVGTLTITNSSFPTLLWQNSEVGTLNTGLLCDGSTMLATVSNTVSDLELSSERLSSVYEVDSTITDRIQIHITGNNGAYVDNLIIDNLDAWNGAVFFDRMKIGTANINSSNRIGDGTGVDAASCVIQSSVSARIINNSIQDRPIKVR*
PicViral_100062016	F003481	N/A	MDDIQEELRLAREELRQAREELERLKASEDKSEKIQMTSGDIVRLVIAAPVVFVWLFLGSRIIISATTSQGVLENIEPLLLALSILTIPVTAILSSLFRTDGNGK*
PicViral_100062018	F105886	GGA	MVEVDTKLRSDANLDGNCTDSTVGSATVSTLDMGGALYRTATIPFEIQLYEEVTITP*
PicViral_100062019	F007893	GGA	MAEPFNVHFEITGPVFDGSGLRVMQGIINRGLLDMATLEGANKVKDQLYGPPASQYWKADPSERHGAHTRDLKRRVAASQPSDNLAVFDAGGIHYAPKVEALYHMFAKATAAINRDKASLYHKYIGGALIEAFD*
PicViral_100062021	F006641	AGGAGG	MPKAMCIQNFSSEAGVAYESGVEYDVPAATLKANPLYFEKQSGTAENKMADTVEDKSEAAE*