Scaffold PicViral_1000520

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000520
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13084
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (80.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F053548	Metagenome	141	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100052026	F057769	AGGAG	MIEIGSIVESIGFVQGYNKSNHGLVISLMADGKIARVFWMATQQSGFCSVGDLKVIT*
PicViral_100052027	F005547	AGG	MMTVWVMQGSYEGELFSSVHLTQKGCALACISDIIEFHGIDDEETALSVINSSYAFTETDGEQTESVEWDQEKLKDMTSEQLWKIFSEWCEISWDRMSDRGYNIDANSMEIQA*
PicViral_100052034	F053548	AGG	VKHSGAPSIGDIVIALYDEERDISCVGLVTETKGIECKILWSSENNVIGWWQRSKLKVISPTSGKFNALNNHLTT*