Scaffold PicViral_1000387

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000387
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18587
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055656	Metagenome	138	Y
F068135	Metagenome	125	Y
F081887	Metagenome	114	Y
F082712	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100038717	F068135	AGGCGG	MNPDAGSITAISTMYKKDDIVLIKSSAGDVIPPFHVKLIERIERKPPKDPEYIIWRACLTKPKEADILRKEWHIPFKFPNEVETFVCETNIIKLIKTDGKKELSTGH*
PicViral_100038720	F081887	AGGA	MRIEKNTICYTSKIGHNNFWYPTHNKVLVKEPCSVQKMTWISGGSKIPIKVLKSCLIPIDITENTTCNISPPTKNDYTVVWVERCSIN*
PicViral_100038722	F082712	GGAGG	MDPSKENNKKWKKVRIFDNYKDANELRCVLLDNDDTGKLLVKVRRCGVEGRQFKIKTHFRELKGKKNDNS*
PicViral_100038723	F055656	GGAGG	VEIFGIILFMNLCIFGYFTYSFIQYRKREKYRTQELNHRVQYMLDQMERDYQESIVVEPVTNIFREHVIEEVSKQRLVYDKRTGKFIKLRQID*