Scaffold PicViral_1000274

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000274
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24168
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (81.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018272	Metagenome / Metatranscriptome	236	Y
F021867	Metagenome	217	N
F038421	Metagenome	166	N
F038425	Metagenome	166	Y
F047313	Metagenome	150	Y
F061287	Metagenome	132	Y
F075333	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100027411	F018272	AGGA	MLKRIIQRMVKKLGMVGLLMMIGDYAVGATKSKKDDEVWEEVKMLLESFK*
PicViral_100027414	F047313	GAGG	LSNTDVRLRRLEQTKRTQVSASTQQPSITEMSDGDERVVLAGGKTLRVYRKEFGKLWYMEFTGI*
PicViral_100027419	F038421	GAGG	LEPSRTLNYKMKSMFKYCPKIEKSCAFCGESNWNPMTDSKSDNTYLFCGMVSGYETRVEPLPECWLKMTPAMRTKYRQQKKAKYEALNPKTLDYKTVRNKKYNKSY*
PicViral_100027426	F021867	GAGG	MSDNNEQVDWDKVNRGKVRYGFALELYKKGEILKPSEIGKIEGFVQYVMDGPDYDTDDEGKPDKSSPRLMPKEECKRVITEESEGSKAFVKAMVHIDAEGLNDNDLEKVLQALKTGKITMDNLQGSLDKIQQMKQSYK*
PicViral_100027432	F061287	AGGAG	MDKNDREVMIEQLMKLKLERKILDVMRDTEIRRLFSILKRYVK*
PicViral_100027434	F038425	GAG	LDNCFHPNEKKGGPMRDGEKSDIHCPKCDALMWWWGYASSSLDKESADIGLGCENPKCGGHEVLPEDVYDAIVIEEER*
PicViral_100027435	F075333	AGGAG	MKRNSMRYLEGLVKRGVRMNLRSLKQFRNRERGIDSIVKKIVPTTHKDLMDVTNTARWLMTNAPEEYIYGEMVDIDNAIASNLSYYLRRYANSYIGQLSQ*