Scaffold PicViral_1000207

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000207
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28424
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (89.47%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003161	Metagenome	504	N
F003481	Metagenome	484	Y
F005219	Metagenome / Metatranscriptome	408	Y
F006641	Metagenome / Metatranscriptome	368	Y
F007893	Metagenome / Metatranscriptome	343	Y
F017722	Metagenome / Metatranscriptome	239	Y
F054352	Metagenome	140	Y
F072748	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10002072	F072748	AGGAG	MTMTVYSVGDHIRIDGWCDCGELIKPGKGGVLALRQSSTCWHGPKTLVLRVFASGDYLLENGHGYVRLAGPHEVCC*
PicViral_100020727	F003481	N/A	MDDLQEELRLAREELERLKATEDKPEKIQMTSGDIVRLVIAAPVVFVWLFLGSRIIISATTSQGVLENIEPLLLALSILTIPVTGILAALFKIDGNGK*
PicViral_100020729	F003161	GAGG	LSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWIQSRTNGWQTLGDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGPATVSTIDLGGSLYRTATISFDIQLYEEITITP*
PicViral_10002073	F005219	AGGAGG	MTIRRTCPECGGTMTAELLRPDPHEPPVLMLICPCGYWEKPAADIEADVENHPRMPGF*
PicViral_100020730	F007893	GGAG	MAEPFGVHFEITGPVFDGTGLRVMQGIINRGLFDIATLEGANKVKDQLYGPPASQYWKSSKSERHGAHTRDLKRRVAASQPSDNRAVFNAGGVHYAEKVEALYHMFENATNAINRDKAALYHKYIGGALIEAFD*
PicViral_100020732	F006641	AGGAGG	MAKTMCIQNFSSGDGVVYESGVEYDVPAATLKANPAYFKQGGRPTNKMAETTEDKEVTT*
PicViral_100020734	F017722	AGGAG	LDTKEIRNEAGALLDQAQTAIEQGELDTFQRLADEAQVRMERADQIDQAASQVRKLRGEFSQPLNAIPVTSNDVAVYNAMDTTARIKNDYKPASWVKGLPAMAQPLWVQDLCGDNVKDEARFMTDTFIKWMRSPSDDMFWKTASPDEVKAMQEDTDKLLCPVS*
PicViral_10002079	F054352	AGGAG	MKTPIQRLLEAQRHKDIRDVVLDTLERYRATRTMVQDCCDDLGISWGTFYKWCAELDIEVGKYHFAEVRRG*