Scaffold PicViral_1000140

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000140
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132284
• Total Scaffold Genes: 167
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (29.34%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F025852	Metagenome / Metatranscriptome	200	Y
F028316	Metagenome / Metatranscriptome	192	Y
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F036473	Metagenome / Metatranscriptome	170	Y
F056154	Metagenome	138	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_1000140118	F056154	GGA	MTDYDKLCERYMTRQVRSFYPRKFELSKEFLDAFKLEYSRLVEGGQNKKTLLERIRKALTFHL*
PicViral_1000140152	F016734	N/A	MNEKKVKQKYEQALDKLDLTDSERDAFDHDAKRSLIDLETYQETDTFSLQGYKLSKVMDDIVLAQYVDLSNDGRSVIRNGIHIPLSQVKRTWRLARVVLVGPLCKYTSPGDVVCFPDDKGIKVDNLRVVGYDRSLRDCLFLNEQRFFGICQDLDDDDNQPSKS*
PicViral_1000140153	F036473	AGGA	MITSLASLKAILLDKVCEVKFVRRNPKPGRPATRRMLCTNNVQLLNSVEGRTTLNYDPPREAPNYNPNQENLIVVWDILMQGYRTINCDTVDLISTLEADETFWVYLNEKIAPMSAGEKMGFMNT*
PicViral_100014062	F072246	GGA	MRNNPPTKDYSQLARWLCLFEAVNIIADKAEKIGHTKDCLKPIPINKYIAERYHSVLKDVEYEFSNNLHTHRR*
PicViral_100014064	F033600	N/A	MMKGLLFEDLYKYTNKYWKDVKSRHVRPTTKTFADIAKASPATYNKISAELVPFPGDHLIEQLGSAYKNVSDATYLLNQLFENPSTHMDEKVVQSATLKLQKIQDLIKSVSEDLDHDESDS*
PicViral_100014065	F033590	N/A	MGKFENKFLSLLLEDEFDAAEPSAAPAQAPAPAIDADPEADRQSFANALDEPDHAKDFEDVIDSNPNEQQELSDLQEWITNIDEVLQYLNGGISSVLGKLRDDNKVGTIYADVTDATKNEILDVCERLAGLNQIFKNLYIEKHK*
PicViral_100014075	F028316	N/A	MKRQMPKPRNFDNLLKSSINAVDNVDSMEEQDMSFINDYLAEHLKSFILLGYDLKGESVVIVSGKTPQDYDAIETLLRRVSSIDFFSDIQEQKNTDE*
PicViral_100014076	F035326	GAG	MKNKVTTCGYFIKRLRDNGYTVNRIFSDYTSNDPRRWTIMINPEQNALYITCYVNYDWSGDFKFELNDGSHFKSYQLKTDSMEVIMTKLIEKNITPNEKTNAQT*
PicViral_100014091	F025852	N/A	MDIITYVDSIGRTCFGEVVERADSFLRVKSPAMIMVTPNDAANMKVDVMPLFFTEFSSGEPPVFKYANSQYTEVEVTISDKILIHYHAKINVKQEPSPEPPVVALSEGDIPEVTLFEEDTSSGDTSSGD*