Scaffold PicViral_1000056

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1000056
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170861
• Total Scaffold Genes: 209
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 164 (78.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075976	Metagenome	118	N
F081216	Metagenome	114	Y
F095334	Metagenome	105	Y
F103079	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100005612	F081216	GAGG	MNFQVGDLVTLKHYRGDPDAPPPLALVMDITSLSILDRILIQFFDTSGPEMAAPDHWIVVSRAK*
PicViral_100005643	F095334	AGGA	MEYFAKSRLKNNLSYFGIHEDTAVAKWDAEEQCFWYISLHKIIGPHPTLMTALHPEDGGTFKPIAELSGQGDVNTTMNGLG*
PicViral_100005656	F075976	N/A	MQMKQLFESWNKYLADNNWKYRILNETAFSRIVTDYGDRGYIILTSDRSCEAELGLAPGKECSEEDTAIQDRVNRENMEQFLSDVRTAGFGYIPTLGGYKEDLIDPETGEPVKDEEGEIVKVDTEKPENSVIIVARPEQGGDHEELKSVGMVLADKYGQDSFFYKPPDDVDEGAYWIRPDGSIDMQFDTFTINDLKQQFYTQMRRGPRHRFTALDESKELVFRVRTSPTSTAEARRRYGEVFLKFSE*
PicViral_100005667	F103079	AGGA	MKHQKPIRLVHEIKKTSIYDAPEPLALILGEKKKTRYSPFPLSPEQQFELLYLVRTRKSGIITREELQDIIFVEPTLH*