Scaffold Ga0061020_1045790

Overview

Basic Information

• Taxon OID: 3300003688
• Scaffold ID: Ga0061020_1045790
• Source Dataset Name: Coassembly of YNP Bryant MS undermat 2012 and YNP Bryant MS upper layer 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1084
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005028	Metagenome / Metatranscriptome	414	Y
F032180	Metagenome / Metatranscriptome	180	Y
F085751	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0061020_10457901	F005028	N/A	RAAMSFFAARLRGAELDETRLLRWTRHKLRSDARAVAELMLTVGYRPTFIRYFLRYHIPALRESAAVGERYIDPGAAPEARLGLCWRLDDAVLTVYTDLHAAAKRLKQPYRDLAAVXLRWGXVHETVVQLLAKTLERKAKDVVED*
Ga0061020_10457902	F032180	AGGA	MWWKIDPIPHQELEEWERAVGRFERAAKRDVAVRAAGVFVIYELDGVLGYVAGREAPDGAYLVERWVRGKRGWTLYE*
Ga0061020_10457903	F085751	AGGGGG	MNDLIAWLIAGGVIFALVNSNVADGLLSALDLSDNLKRAADWARGVRGLPAGVAAVCFFAMAYVFGALAWRYDLVPTWRFMQPIAADVLATGADWLTFFVVFLTLLPTLIEIATAKLAQRDIPMLRWMVYFFIFFDLVTDHAEAV