Scaffold Ga0061020_1028943

Overview

Basic Information

• Taxon OID: 3300003688
• Scaffold ID: Ga0061020_1028943
• Source Dataset Name: Coassembly of YNP Bryant MS undermat 2012 and YNP Bryant MS upper layer 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1566
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038584	Metagenome / Metatranscriptome	165	Y
F076976	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0061020_10289431	F076976	N/A	YFRPPVGKIVHFSERDDGLYVALKLERPLEDVSGVYLSVGGFAIGSTREDGVYVIEELAVLEASLTPRPAQPNSELVLLMKTLTDMATENEKAPLETAGAQAVQKEEKVSVQATQKVATAPSALGYLRKQDLAQLEAFVNEIAARVEALETLQAQVADLQQRVADLAAAVSQIQGMTQEAMTQSVEKALKAVEEQVQPLAKELAKTMLLVSEALKKTNTQRI*
Ga0061020_10289432	F038584	N/A	MTEEIKQIQKAGEELLATLHATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSXLRSARKLMQRYVQKTTVGANTPREYIGEAFYVTRQPVIEFIQDYLRTETLDVLAEITQVRVNPFTGAPATVSEGGAKPTMATAPQRFNSNYQKIAFTDVITDEVLLAYPNIVDFLIWHGAYRIEVFLHNALITAIAGIATTATLPTGILSPQVADLLIYMRAFHEQQGAIGPRGDWPANIAIVPFPYYWRLVFGGLKTTTGEYIQLDRQLQGLALIASGTAQINPTIVLNGNEMEVFYL