Scaffold LSCM3L_1034282

Overview

Basic Information

• Taxon OID: 3300003667
• Scaffold ID: LSCM3L_1034282
• Source Dataset Name: Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 789
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location

• Location Name: Lithgow State Coal Mine, New South Wales, Australia
• Coordinates
  • Lat. (^o): -33.460524
  • Long. (^o): 150.168149

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053314	Metagenome / Metatranscriptome	141	N
F067884	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
LSCM3L_10342821	F067884	N/A	NYLVESVSMRDMQGAVNRYTVTAVSGDALGGWLEWFSALARQAQKFVLYDEDQVTMLKVVVETVVVSDSATEYDWGTVDRKPESRVGLAHVDFSETDWVH*
LSCM3L_10342822	F053314	GGA	MRTTESTVVVKDNVVVTVWEAGKPVKTYHAHNTWGIAGLNALRNWFAGLGGTPITHIAWVDTAGVERARDIVTQRLVTADKAVLFRQYLPSATPSNGYTLNRIRAYNAQTGGTRFAEAVFDAAGVAKTTNNQITVEWTHTFADGGT*