Scaffold LSCM3L_1008322

Overview

Basic Information

• Taxon OID: 3300003667
• Scaffold ID: LSCM3L_1008322
• Source Dataset Name: Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2389
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group → Microgenomates group bacterium ADurb.Bin238 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location

• Location Name: Lithgow State Coal Mine, New South Wales, Australia
• Coordinates
  • Lat. (^o): -33.460524
  • Long. (^o): 150.168149

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072352	Metagenome / Metatranscriptome	121	Y
F088943	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
LSCM3L_10083226	F072352	GGGGG	MSSKTSRIADLRRAPTVVHLPGCPNGCGEMLALDDGWQCPVCNWYRGYYRGERRP*
LSCM3L_10083227	F088943	AGGGGG	MSGLSQLVIANEDHLVAIYRRTGDTSFTHKEIADLIPCGAMLRYTVPGIFIPARDSNGVPLKGGSRARSNVWCWHPRAAELCRQAIARDHRWENLANGLTGGSECV*