Scaffold LSCM3L_1008320

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LSCM3L_1008320

Scaffold LSCM3L_1008320

Overview

Basic Information
Taxon OID	3300003667 Open in IMG/M
Scaffold ID	LSCM3L_1008320 Open in IMG/M
Source Dataset Name	Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2390
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location
Location Name	Lithgow State Coal Mine, New South Wales, Australia
Coordinates	Lat. (^o)	-33.460524	Long. (^o)	150.168149	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103106	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
LSCM3L_10083204	F103106	GGAGG	MDIKKVVEGLELIETVTPSYKHARRRDMTDEEAETAVNWALEQAIIILEQLIGATDE*

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