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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003667 Open in IMG/M |
| Scaffold ID | LSCM3L_1006207 Open in IMG/M |
| Source Dataset Name | Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2)) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3029 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lithgow State Coal Mine, New South Wales, Australia | |||||||
| Coordinates | Lat. (o) | -33.460524 | Long. (o) | 150.168149 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029451 | Metagenome / Metatranscriptome | 188 | N |
| F054066 | Metagenome / Metatranscriptome | 140 | N |
| F101228 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| LSCM3L_10062072 | F101228 | AGG | MEEIYANMNRVRDVWKWTAERWAYFTVLGIVYLVVYYATGSNIQAVSAIVILISMWLGVLWVNRLPREDRLWWKRFVGISLILLAALVAISYYPASALTITGEPAGDQIHWEIADGQPPYTVFVNGKEIVSGYPGTVLSTDAEPGRQYTAVVMDNESVADHTVTGEYYTYPLWVWMLFAALVACLIVSIWLPYAAFGAAIAGGFLLLMVAPNPDYAAYLRIFAGAAFIVGLAGLAGRLQG |
| LSCM3L_10062074 | F054066 | AGG | MFGMTRKPKELNRFRVGKGSPGLKAVMYRMTNKSYLDIRIYRGYREVTRIVTPDTGMRRFVVEGVGAFVMPNEEQMLRQLHDRHALYIPYNVNSSAPGEVTDDLEPVAFVYPPLSPAEFQAELEAQTVADLLAETEKDMSWIWLLAGGAVLIFVLILLFGGA* |
| LSCM3L_10062075 | F029451 | GGAGG | MAVDFEDLIASTSSTAGKPSIIEALLSTVDAIFTNNRMLQRSRLSSRNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYSRYDNRVLTAVCEGALSGRISLDGKSRDEIIRIFQAVGNTGQEQPVGRGGGVLGRFDY* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |