NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LSCM3L_1005883

Scaffold LSCM3L_1005883


Overview

Basic Information
Taxon OID3300003667 Open in IMG/M
Scaffold IDLSCM3L_1005883 Open in IMG/M
Source Dataset NameLithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3164
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location
Location NameLithgow State Coal Mine, New South Wales, Australia
CoordinatesLat. (o)-33.460524Long. (o)150.168149Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042860Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
LSCM3L_10058833F042860GGAGGMASMTREEILKRIEIEDARIASADRNIEGLILQKNKSLDEQARLFALLEELDAEE*

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