Scaffold LSCM3L_1005516

Overview

Basic Information

• Taxon OID: 3300003667
• Scaffold ID: LSCM3L_1005516
• Source Dataset Name: Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3331
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location

• Location Name: Lithgow State Coal Mine, New South Wales, Australia
• Coordinates
  • Lat. (^o): -33.460524
  • Long. (^o): 150.168149

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065813	Metagenome / Metatranscriptome	127	N
F073596	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
LSCM3L_10055166	F073596	N/A	MNVFEKIKLWFTSISKIVKFLTDTFGEAKILKDKQANFKDWVEFVIAFIKDALQYADEIAALAQSQPVQTKGQVIKAVKQDKVISTNFKTAYFKEKAKNFNK*
LSCM3L_10055167	F065813	N/A	MTPLISFFGWFDIIVVTPFVLYFGYKGVKWIIGKLKNKQPQEEIDTPDVES*