Scaffold LSCM3L

Basic Information
Taxon OID	3300003667 Open in IMG/M
Scaffold ID	LSCM3L_1004843 Open in IMG/M
Source Dataset Name	Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003667 Open in IMG/M

Scaffold ID

LSCM3L_1004843 Open in IMG/M

Source Dataset Name

Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3742
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3742

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location
Location Name	Lithgow State Coal Mine, New South Wales, Australia
Coordinates	Lat. (^o)	-33.460524	Long. (^o)	150.168149	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lithgow State Coal Mine, New South Wales, Australia

Coordinates

Lat. (^o)

-33.460524

Long. (^o)

150.168149

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023862	Metagenome / Metatranscriptome	208	N
F036250	Metagenome / Metatranscriptome	170	N
F058178	Metagenome / Metatranscriptome	135	N
F088843	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
LSCM3L_10048432	F023862	N/A	MRIKVQKKWYNVKSTWAELTIADAQKLAEHEPPAEYLKYLKNEVDGLSPDIEMKVLSWIGEILPIISDMPAEVIESLMPTDRWVILKSLMHIVSGIYLQMPYDLPSDMPPATILVEGNLYHVPTVRKVYNRDIYFSTLDFKGFSELLELQQLSDNIVKNAAMLCALVLRKSDDKEQLSEDEKLRRAEIFSNMPMLDFWRIFFSLMRGLEQSVNYTLLCSLRESEKMMRHNLLIQLWKKYYIWPAKRLGRCIISGFKKVFMRH*
LSCM3L_10048433	F036250	N/A	MSKRISLKDSYSKLYKLFTNYTYQQTVYFREDNPFLTHNRMNPAANKAVFWIKPPTIEALPAEGLHWRVPAIIAAGNLTTVLTIIDDFINNYSQASYWRNIRPLPASEIGIWDGWEAVAVDLFIDWNHICETTLP*
LSCM3L_10048434	F058178	N/A	MKLEWIIDELRAELQKQQHIASGAMAASLRIEKDENDYVVTGLNYSYWVNFGRAAGKRPPIAAIANWVNIKGLPKEAVWPIANSIAIKGTPGQPYVVWEEGNNLKRTEFIEDTLTRCKDRITEDLADEWQAIIFEKFKNKILEK*
LSCM3L_10048436	F088843	N/A	METLKIDNVVHPVIDNSIELSIELPTEPGEIPITRTTSLKVPMTSQLAAICDPNGYQGTAPKATLVTQRFSLDGTIYPTQVTENERGTTAEVVLLSGNAGWVQKLKERSMKVLDMSKFNHLVNITNIENSWRGDLPYCYYTADRGDEIMPGERTLYEFRPALKIATLLKEIFRQAGVNLISNTLNASTFGKYFVVYEPGDNIRNCESVDYKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold LSCM3L_1004843

Overview

Ecosystem & Geography

Associated Families

Sequences