Scaffold LSCM3L_1001001

Overview

Basic Information

• Taxon OID: 3300003667
• Scaffold ID: LSCM3L_1001001
• Source Dataset Name: Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15399
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location

• Location Name: Lithgow State Coal Mine, New South Wales, Australia
• Coordinates
  • Lat. (^o): -33.460524
  • Long. (^o): 150.168149

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064746	Metagenome / Metatranscriptome	128	N
F091989	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
LSCM3L_100100116	F091989	GAGG	MRLHDFAHDIINRARANGYATDASKASDALIRPFGEHDEQKATLMSLQGSTLALCWVNAEGKAVPYDETAFNNVQREIAGLQSKVDHNTKILDALDAKVAELGLTEFSLAKLKGQKEKLRMEINQIRAEENDSLRSRWESVVSLGGNRATYDKLPEVIEARAKAAAQIEPIESDILALDRQVRDLESILSKFKR*
LSCM3L_10010013	F064746	AGGAG	MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWDTSYGEVSKYNPADLEDQFGIPGGAYDWTGFEDYGAFNYRSGEPSGSITKGGWANIFVLKPDEDLSDSSSIDILKHATYMIINPKDHRNAVIGGDLKEKEIEYNGRQAYFIEVEGELITPENYHTFINDNSLGAIAFFLDDDTVALIDVETTNDFGMSAWDVINSITVN*