NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25404J52841_10041761

Scaffold JGI25404J52841_10041761


Overview

Basic Information
Taxon OID3300003659 Open in IMG/M
Scaffold IDJGI25404J52841_10041761 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)970
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046706Metagenome / Metatranscriptome151Y
F099644Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
JGI25404J52841_100417611F099644AGGAGMDEGDQLAGVGSVVEIACECGRSGCAEVIALPSCVYEEAQKEPRRLLLAPGHELPGASPLVRCDSFVVVSGEERLKRRI*
JGI25404J52841_100417612F046706GGAGMTDVVDFDSRDTPFPVALAGMIGLGKALFEGFYGVLGIAIASSMDDSFGAGALVFGIVYAIASILLLRGSRFGYYLTVALSVIGLVGAVVYMFSSEGTVFGGALLIALLNALVLYLLLGREGTRDFFGLGAGHSR*

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