NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold CR30jul_10374

Scaffold CR30jul_10374


Overview

Basic Information
Taxon OID3300003625 Open in IMG/M
Scaffold IDCR30jul_10374 Open in IMG/M
Source Dataset NameHypersaline viral communities from Bras del Port, Santa Pola, Spain - CR30 Febrero14 Julio precorrection
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLifesequencing S.L.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)600
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Source Dataset Sampling Location
Location NameBras del Port, Santa Pola, Alicante, Spain
CoordinatesLat. (o)38.192206Long. (o)-0.591865Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088354Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
CR30jul_103741F088354GAGGMTDTPRAQLDVDRFETATVNANGQIYLGRDLQGVKVHVAIEIVTDDDEQEDPE*

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