Scaffold JGI26273J51734_10040328

Overview

Basic Information

• Taxon OID: 3300003620
• Scaffold ID: JGI26273J51734_10040328
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1564
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005578	Metagenome / Metatranscriptome	396	Y
F011629	Metagenome / Metatranscriptome	289	N
F081202	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26273J51734_100403283	F011629	GGAG	MLKSLNTTQVKDLVKQRFGGSLKQVYLNKCYSNKTEIADKRNMAFAVXGDAYKGVDLTALAKEIGCKRVKLHAAFLRGMRSGCWXRXQHVSYNK*
JGI26273J51734_100403284	F005578	GGAG	MKNITTRELKHLCNFLTHTMNYKVELVSDEDFDYDEEDCDNCYNWVNATEELCTQTNKVLDNYFTENDKTLATAFETAIDYRYDDDCINEGISEHFFDYCKKHNILEFYFKQEDAHDYDGADANMRM*
JGI26273J51734_100403285	F081202	GGAG	MLNTQIFNAKSEDKFVVIATHYTGEIMDGCAMFDAVIMDTHEGDVYVQENCMCMDCALLQTEGVADCITYKQYKQNN*