Scaffold JGI26273J51734_10004429

Overview

Basic Information

• Taxon OID: 3300003620
• Scaffold ID: JGI26273J51734_10004429
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6723
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002282	Metagenome	575	Y
F008817	Metagenome / Metatranscriptome	327	Y
F049998	Metagenome	146	N
F059978	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26273J51734_1000442913	F008817	AGGAG	MKYTVVKRIHFSHSNDYVTVIKEAETFEDAMKFKVAAEMLEAKDSGNTIQILISTDDAFDFTSKPLVLTDEVKQAS*
JGI26273J51734_1000442915	F002282	N/A	MMSEADIIEYNKLTEKLELLKKQGTPVDDRGPNDLTKQIEILEFRNEKLHNYNQKLIEEVRSLRSKLYIKEN*
JGI26273J51734_100044292	F049998	GAGG	MIKDELEIKAFYKGKEVKIIELHHLGFFHSGLITLARKWKVKPFDVLMEDVSDETTQAALNIMIGLIYKDMCTKSGYEVNLKKFKNEMLLKNKKPKVFLMESDYLKIPDNHFDNGIGFLKKIGFIETDYHRSHVQINNSIVDYCRKLGNYLFNTWYCQESFKRNTHYFGGHSSSDHYKAAQEREQISDKTLN*
JGI26273J51734_100044295	F059978	AGGAG	MSSICKDCGHRHRGIAECKFCDCVWETVTLDHNWIEAIKAWFKKLLFWK*