Scaffold JGI26273J51734

Basic Information
Taxon OID	3300003620 Open in IMG/M
Scaffold ID	JGI26273J51734_10001399 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003620 Open in IMG/M

Scaffold ID

JGI26273J51734_10001399 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12705
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12705

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000930	Metagenome / Metatranscriptome	830	Y
F001855	Metagenome / Metatranscriptome	626	N
F012041	Metagenome	284	Y
F018288	Metagenome	236	N
F084260	Metagenome / Metatranscriptome	112	N
F085573	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26273J51734_1000139913	F012041	AGGA	MPKYKVTLEVDSEWVKNFDLSFDADSEQEAEAQALTEVKMNLSDYITAYADEVEE*
JGI26273J51734_1000139915	F000930	AGGA	MYKVIRWQTDGTEEVWTAPKKPTLEELYKLIGCSTIERQSGYDKNISKRTFDMWMDEESKMKAPEFIKKNVRATNSWFRWMERTNRMCIPGDFIAGNTVIYKKA*
JGI26273J51734_1000139916	F001855	AGGA	MQPLRKDHVDHYKDFVRDEFSLASSRVEREISQQAQDKVEEVGDKFAQVINKNLPSLIKDMAKKEKALRDFQQKKYSMENDLRYQAQKIADQISEIFNNTIKRNKWDMSRINIDIHDDKDAVDYITKKIKKACYEEAEVHARAKHKLYHALENKKKKCLNILYTGSHIQPTLVELQKEMATANIQLDLPNSLLALPSK*
JGI26273J51734_1000139917	F084260	GAG	MEILFALGLLAIVGFGLWSMRETNKFVDEQNRQIRLQRAFDRVDKIVKQKQMEFKFDK*
JGI26273J51734_100013994	F085573	AGGA	MKGINMKNNFKLDHQAIGDCYYDVYTKPTLLDKKTIEYLLKDMAKILNGELTAEDYRNEIKQWVSERSDECYLDQGKVRRYDERHA*
JGI26273J51734_100013995	F018288	AGGAGG	MKDMRELLDTFTDYEWKQAKKEMTKRIPSMDIDKMTMDEFQTLAKFLASPDFSDIDEYRRRLH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26273J51734_10001399

Overview

Ecosystem & Geography

Associated Families

Sequences