Scaffold JGI26273J51734_10000245

Overview

Basic Information

• Taxon OID: 3300003620
• Scaffold ID: JGI26273J51734_10000245
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28099
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.58%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F016832	Metagenome / Metatranscriptome	244	Y
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26273J51734_1000024522	F016832	N/A	MSDLKYTMRTFYVPADKLETLVKFQNKCKELGHKSYSKVLLKLMEDFNDG*
JGI26273J51734_1000024523	F081203	GGAGG	MMDKYEFYYRQKQEWDYWQANQRHNFLSDRLLAIISQVQWNKGILKRVKLSDNDLEIHQNRFSNLITXVVKISIELKELAINYNPKRMKQLIXILTKIKNHNNEPIXNS*
JGI26273J51734_1000024529	F005706	N/A	MKESKVLKALGLSWLDIQNMLTNGMTMPEIAKKYKITYISLVQAYRIQKKDFKYIDYKQPKKEVEDIKIVSSSFDRLYTEESLNENELLAFYKYEQKNKAYFDFN*
JGI26273J51734_1000024533	F038672	N/A	MDELDIILRKNRLDIMIIKASAEVEKNNNKVKKEGLEVLMDILELIHDLQHEIRQNYKDIAKLKYENAVAYKENAIIKSEFSTYKHNLKKAELESNKNE*
JGI26273J51734_1000024537	F030436	N/A	MKSTLKKIAEIIKDYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHKDYEKVIHDRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVIDAMRTNISFLKSEMYNVTKEY*
JGI26273J51734_1000024538	F056150	N/A	MDRKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLIDSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS*
JGI26273J51734_1000024541	F043411	GGA	MILEKTKKEMLKRRLTYNNKRVYIKSLSSKIAIVSHTEEGNYKQFKVNIEDLVEFK*