NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26381J51731_1021464

Scaffold JGI26381J51731_1021464


Overview

Basic Information
Taxon OID3300003618 Open in IMG/M
Scaffold IDJGI26381J51731_1021464 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1778
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002566Metagenome / Metatranscriptome547Y
F091872Metagenome107N

Sequences

Protein IDFamilyRBSSequence
JGI26381J51731_10214641F091872N/AMPELVAAVGIIAAATISAISGILVARLRLDYRTQNGTQVDLLREINKRTTRIEDRVNDHGERIATIEGR
JGI26381J51731_10214644F002566AGGAGMNYLKWKLSTEGVSGTGPEETIADRGGLAEASWAVDGDGYRIGYLTQTANLDDLDAWDVTEPTEAQALTFCQVLYAEAEVLPDGRISGPPPPDDDPE*

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