Scaffold JGI26381J51731_1004366

Overview

Basic Information

• Taxon OID: 3300003618
• Scaffold ID: JGI26381J51731_1004366
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5271
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053965	Metagenome / Metatranscriptome	140	N
F077161	Metagenome / Metatranscriptome	117	N
F090238	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26381J51731_10043662	F053965	N/A	MELLRLWQNNGEIKMGKLADAIKEYKISPTNSPQERAAKEIITQITESEWWKSNVGTEFKWPRKYDSKKQMFGFREPQFITFGNLILPRCEFCQNCGLYKGLLTYNSGKMLYAKPINI*
JGI26381J51731_10043663	F077161	GGA	MRNLLISEIQARFDRHAKLHRFEVDELFKNIKHKPFTEIQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDIVTEEIEHVQDSITKQDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTKQQELIPHYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGXXEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVKMTYEGLQKAELFNNIGRAKA*
JGI26381J51731_10043664	F090238	GAGG	MRIHVDESDDAHGEYHXHDGTIEVWLGGHLTVWGLFDTLIHESLHQAIEENCERETTEKQDHWVIQRLCF*