NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26082J51739_10018744

Scaffold JGI26082J51739_10018744


Overview

Basic Information
Taxon OID3300003617 Open in IMG/M
Scaffold IDJGI26082J51739_10018744 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2985
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028350Metagenome / Metatranscriptome192Y
F031661Metagenome182Y
F037204Metagenome168N
F047976Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
JGI26082J51739_100187442F028350GGAGMRIKPINPVAKAVAQSRRRAQAVPDKTKYNRKKDKHNANQSRENEVTESETPQSKA*
JGI26082J51739_100187443F037204AGGAGMNVEIYKSLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIITYLQFIYDTEKGNEN*
JGI26082J51739_100187445F047976GGAGMAKRGAIVDMGRHKALGSSWRSMDSMAYSRSYEPETRPEFRCYVTGQAKAWQAEYDAKVAADAKREAQMQALLDLKQRMLDKNLL*
JGI26082J51739_100187446F031661GAGMPKLTSNNFAAQLASANNTVQAKGLVLSQWDKSICKADKSRFKALCAKDGFWFSLGEICLELLKQSGGNRTDSALLKDANLHTVAKQRRKEAMDFVTNFKVIEDNKLIGKFASMKELLKAVDTIVNPKVEKEPKVPVEPEAPVLAIEDKSSEAATQSTKTVEDLALDVLLQVEANGFKVSDFKIAIANAIGMLEENNEVVPFEMVG*

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