Scaffold JGI26082J51739_10018744

Overview

Basic Information

• Taxon OID: 3300003617
• Scaffold ID: JGI26082J51739_10018744
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2985
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028350	Metagenome / Metatranscriptome	192	Y
F031661	Metagenome	182	Y
F037204	Metagenome	168	N
F047976	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26082J51739_100187442	F028350	GGAG	MRIKPINPVAKAVAQSRRRAQAVPDKTKYNRKKDKHNANQSRENEVTESETPQSKA*
JGI26082J51739_100187443	F037204	AGGAG	MNVEIYKSLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIITYLQFIYDTEKGNEN*
JGI26082J51739_100187445	F047976	GGAG	MAKRGAIVDMGRHKALGSSWRSMDSMAYSRSYEPETRPEFRCYVTGQAKAWQAEYDAKVAADAKREAQMQALLDLKQRMLDKNLL*
JGI26082J51739_100187446	F031661	GAG	MPKLTSNNFAAQLASANNTVQAKGLVLSQWDKSICKADKSRFKALCAKDGFWFSLGEICLELLKQSGGNRTDSALLKDANLHTVAKQRRKEAMDFVTNFKVIEDNKLIGKFASMKELLKAVDTIVNPKVEKEPKVPVEPEAPVLAIEDKSSEAATQSTKTVEDLALDVLLQVEANGFKVSDFKIAIANAIGMLEENNEVVPFEMVG*