Scaffold JGI26271J51732_1002838

Overview

Basic Information

• Taxon OID: 3300003615
• Scaffold ID: JGI26271J51732_1002838
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_110m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4603
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039110	Metagenome / Metatranscriptome	164	Y
F058917	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26271J51732_10028383	F039110	GGAG	MSKAVSKKADAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV*
JGI26271J51732_10028387	F058917	N/A	MDKLLKALEKESKDIRSADMVVNGKIHQIYYRIMSGDDHARALELSKKTKNIKETDGSTTELTYYDDDLLRCXIIYFQLLDKDGSRVFTDLPKIQWIKDNITYETASYLAAVMGLKSVSDIVEEQQEALKKMNG*